PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ50766.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 188aa    MW: 21378.3 Da    PI: 7.6391
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ50766.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06107124725
                 SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   7 rffartGtCkyGdrCkFaH 25 
                 + +   G+C yG+ C++ H
  KXZ50766.1 107 NMYKL-GFCIYGPACRYKH 124
                 55555.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-44672IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-44670IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8314673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-74771IPR000571Zinc finger, CCCH-type
SMARTSM003560.7974100IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.087499IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.056100127IPR000571Zinc finger, CCCH-type
SMARTSM003560.02101126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGDNLSFDFE ADIESSHLIA HAQQPIEPPD LPAEAIGQQP ANYRKNFRKT VCTYWLRGLC  60
MKGDACGFLH QFVTDRMPVC RNLLKYGECR DQDCPYKHST DEIKECNMYK LGFCIYGPAC  120
RYKHIKNPGP PPGPEEVEAA KPREYRNINV VVNQVNPGVA REDERPLKRP RCEGPGRGPS  180
GRWVRGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2d9n_A2e-1348106969Cleavage and polyadenylation specificity fact
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947795.12e-87hypothetical protein VOLCADRAFT_103576
SwissprotA9LNK92e-43CPSF_ARATH; 30-kDa cleavage and polyadenylation specificity factor 30
TrEMBLA0A150GLM61e-140A0A150GLM6_GONPE; Uncharacterized protein
STRINGPP1S9_445V6.14e-43(Physcomitrella patens)
STRINGPOPTR_0011s09220.12e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP349277